Detailed information of SNP:
|
SNP ID:
sf1018438953(Gbrowse)
Chromosome: chr10 Position: 18438953 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 65.40% | 34.60% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 496 | 10.89% | 89.11% |
| Aus | 65 | 56.92% | 43.08% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 93 | 39.78% | 60.22% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1018438953 | T->A | INTERGENIC | None |