Detailed information of SNP:
|
SNP ID:
sf1018455065(Gbrowse)
Chromosome: chr10 Position: 18455065 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 66.01% | 33.99% |
| All Indica | 798 | 98.75% | 1.25% |
| All Japonica | 497 | 13.88% | 86.12% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 374 | 98.40% | 1.60% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 57.45% | 42.55% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1018455065 | G->A | INTERGENIC | None |