Detailed information of SNP:
|
SNP ID:
sf1018495833(Gbrowse)
Chromosome: chr10 Position: 18495833 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1382 | 67.80% | 32.20% |
| All Indica | 771 | 98.70% | 1.30% |
| All Japonica | 492 | 13.82% | 86.18% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 367 | 98.64% | 1.36% |
| Indica II | 202 | 99.50% | 0.50% |
| Indica Intermediate | 202 | 98.02% | 1.98% |
| Temperate Japonica | 334 | 2.10% | 97.90% |
| Tropical Japonica | 90 | 56.67% | 43.33% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1018495833 | T->G | INTERGENIC | None |