Detailed information of SNP:
|
SNP ID:
sf1018498611(Gbrowse)
Chromosome: chr10 Position: 18498611 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1386 | 70.85% | 29.15% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 466 | 16.09% | 83.91% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 311 | 3.22% | 96.78% |
| Tropical Japonica | 90 | 61.11% | 38.89% |
| Japonica Intermediate | 65 | 15.38% | 84.62% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1018498611 | G->A | INTERGENIC | None |