Detailed information of SNP:
|
SNP ID:
sf1018498964(Gbrowse)
Chromosome: chr10 Position: 18498964 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 67.88% | 32.12% |
| All Indica | 788 | 98.86% | 1.14% |
| All Japonica | 497 | 14.49% | 85.51% |
| Aus | 64 | 90.62% | 9.38% |
| Indica I | 371 | 98.65% | 1.35% |
| Indica II | 208 | 98.56% | 1.44% |
| Indica Intermediate | 209 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 57.45% | 42.55% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1018498964 | A->G | INTERGENIC | None |