Detailed information of SNP:
|
SNP ID:
sf1018507317(Gbrowse)
Chromosome: chr10 Position: 18507317 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1375 | 66.76% | 33.24% |
| All Indica | 798 | 99.00% | 1.00% |
| All Japonica | 494 | 14.17% | 85.83% |
| Aus | 45 | 71.11% | 28.89% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 58.51% | 41.49% |
| Japonica Intermediate | 65 | 10.77% | 89.23% |
| Group VI/Aromatic | 1 | 100.00% | 0.00% |
| Intermediate | 37 | 67.57% | 32.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1018507317 | C->T | INTERGENIC | None |