Detailed information of SNP:
|
SNP ID:
sf1018511752(Gbrowse)
Chromosome: chr10 Position: 18511752 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 53.24% | 46.76% |
| All Indica | 799 | 80.73% | 19.27% |
| All Japonica | 497 | 13.28% | 86.72% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 43.66% | 56.34% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 57.45% | 42.55% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1018511752 | C->T | INTERGENIC | None |