Detailed information of SNP:
|
SNP ID:
sf1018512034(Gbrowse)
Chromosome: chr10 Position: 18512034 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1369 | 54.57% | 45.43% |
| All Indica | 798 | 79.57% | 20.43% |
| All Japonica | 451 | 14.86% | 85.14% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 212 | 43.40% | 56.60% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 299 | 2.01% | 97.99% |
| Tropical Japonica | 87 | 62.07% | 37.93% |
| Japonica Intermediate | 65 | 10.77% | 89.23% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 51.28% | 48.72% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1018512034 | G->A | INTERGENIC | None |