Detailed information of SNP:
|
SNP ID:
sf1018512114(Gbrowse)
Chromosome: chr10 Position: 18512114 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 55.04% | 44.96% |
| All Indica | 799 | 80.73% | 19.27% |
| All Japonica | 497 | 13.48% | 86.52% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 43.19% | 56.81% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 57.45% | 42.55% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1018512114 | T->C | INTERGENIC | None |