Detailed information of SNP:
|
SNP ID:
sf1018514437(Gbrowse)
Chromosome: chr10 Position: 18514437 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 52.43% | 47.57% |
| All Indica | 799 | 79.35% | 20.65% |
| All Japonica | 497 | 13.48% | 86.52% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 43.19% | 56.81% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 57.45% | 42.55% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1018514437 | G->A | INTERGENIC | None |