Detailed information of SNP:
|
SNP ID:
sf1018561474(Gbrowse)
Chromosome: chr10 Position: 18561474 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 88.29% | 11.71% |
| All Indica | 797 | 81.43% | 18.57% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 42.45% | 57.55% |
| Indica Intermediate | 210 | 88.57% | 11.43% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1018561474 | T->C | INTERGENIC | None |