Detailed information of SNP:
|
SNP ID:
sf1018561811(Gbrowse)
Chromosome: chr10 Position: 18561811 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 57.10% | 42.90% |
| All Indica | 798 | 80.45% | 19.55% |
| All Japonica | 497 | 14.49% | 85.51% |
| Aus | 64 | 85.94% | 14.06% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 42.25% | 57.75% |
| Indica Intermediate | 210 | 87.62% | 12.38% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 58.51% | 41.49% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1018561811 | A->G | INTERGENIC | None |