Detailed information of SNP:
|
SNP ID:
sf1018565292(Gbrowse)
Chromosome: chr10 Position: 18565292 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1389 | 60.33% | 39.67% |
| All Indica | 773 | 86.93% | 13.07% |
| All Japonica | 495 | 15.76% | 84.24% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 363 | 85.95% | 14.05% |
| Indica II | 208 | 85.10% | 14.90% |
| Indica Intermediate | 202 | 90.59% | 9.41% |
| Temperate Japonica | 333 | 4.20% | 95.80% |
| Tropical Japonica | 94 | 58.51% | 41.49% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1018565292 | A->G | INTERGENIC | None |