Detailed information of SNP:
|
SNP ID:
sf1018565398(Gbrowse)
Chromosome: chr10 Position: 18565398 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 68.10% | 31.90% |
| All Indica | 797 | 98.87% | 1.13% |
| All Japonica | 497 | 15.09% | 84.91% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 211 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 59.57% | 40.43% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1018565398 | T->C | INTERGENIC | None |