Detailed information of SNP:
|
SNP ID:
sf1018602527(Gbrowse)
Chromosome: chr10 Position: 18602527 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 68.38% | 31.62% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 497 | 15.69% | 84.31% |
| Aus | 65 | 81.54% | 18.46% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1018602527 | G->A | LOC_Os10g35010(LOC_Os10g35010.1) | INTRON |