Detailed information of SNP:
|
SNP ID:
sf1018640106(Gbrowse)
Chromosome: chr10 Position: 18640106 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1386 | 94.44% | 5.56% |
| All Indica | 773 | 91.20% | 8.80% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 62 | 95.16% | 4.84% |
| Indica I | 362 | 91.16% | 8.84% |
| Indica II | 209 | 92.34% | 7.66% |
| Indica Intermediate | 202 | 90.10% | 9.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1018640106 | G->T | LOC_Os10g35070(LOC_Os10g35070.2) | UTR_3_PRIME |
| sf1018640106 | G->T | LOC_Os10g35070(LOC_Os10g35070.1) | UTR_3_PRIME |