Detailed information of SNP:
|
SNP ID:
sf1018640303(Gbrowse)
Chromosome: chr10 Position: 18640303 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 96.09% | 3.91% |
| All Indica | 790 | 94.68% | 5.32% |
| All Japonica | 496 | 98.39% | 1.61% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 371 | 96.77% | 3.23% |
| Indica II | 210 | 92.86% | 7.14% |
| Indica Intermediate | 209 | 92.82% | 7.18% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1018640303 | T->A | LOC_Os10g35080(LOC_Os10g35080.1) | INTRON |