Detailed information of SNP:
|
SNP ID:
sf1018695893(Gbrowse)
Chromosome: chr10 Position: 18695893 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 62.39% | 37.61% |
| All Indica | 797 | 93.98% | 6.02% |
| All Japonica | 497 | 15.49% | 84.51% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 374 | 94.39% | 5.61% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1018695893 | G->A | INTERGENIC | None |