Detailed information of SNP:
|
SNP ID:
sf1018742015(Gbrowse)
Chromosome: chr10 Position: 18742015 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 64.29% | 35.71% |
| All Indica | 797 | 94.48% | 5.52% |
| All Japonica | 496 | 15.52% | 84.48% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 374 | 97.33% | 2.67% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 87.14% | 12.86% |
| Temperate Japonica | 334 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 60.64% | 39.36% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1018742015 | C->T | INTERGENIC | None |