Detailed information of SNP:
|
SNP ID:
sf1018751471(Gbrowse)
Chromosome: chr10 Position: 18751471 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 54.61% | 45.39% |
| All Indica | 793 | 33.67% | 66.33% |
| All Japonica | 497 | 85.71% | 14.29% |
| Aus | 66 | 59.09% | 40.91% |
| Indica I | 373 | 18.23% | 81.77% |
| Indica II | 212 | 61.32% | 38.68% |
| Indica Intermediate | 208 | 33.17% | 66.83% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 39.36% | 60.64% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1018751471 | C->T | INTERGENIC | None |