Detailed information of SNP:
|
SNP ID:
sf1018871858(Gbrowse)
Chromosome: chr10 Position: 18871858 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1392 | 95.91% | 4.09% |
| All Indica | 788 | 98.22% | 1.78% |
| All Japonica | 483 | 91.30% | 8.70% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 98.37% | 1.63% |
| Indica II | 211 | 98.58% | 1.42% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 82 | 56.10% | 43.90% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1018871858 | G->A | INTERGENIC | None |