Detailed information of SNP:
|
SNP ID:
sf1018874467(Gbrowse)
Chromosome: chr10 Position: 18874467 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 73.73% | 26.27% |
| All Indica | 796 | 75.00% | 25.00% |
| All Japonica | 497 | 83.90% | 16.10% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 86.67% | 13.33% |
| Indica II | 211 | 47.87% | 52.13% |
| Indica Intermediate | 210 | 81.43% | 18.57% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 36.17% | 63.83% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1018874467 | C->T | INTERGENIC | None |