Detailed information of SNP:
|
SNP ID:
sf1018926664(Gbrowse)
Chromosome: chr10 Position: 18926664 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1377 | 68.26% | 31.74% |
| All Indica | 799 | 98.87% | 1.13% |
| All Japonica | 493 | 15.62% | 84.38% |
| Aus | 43 | 97.67% | 2.33% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 334 | 2.99% | 97.01% |
| Tropical Japonica | 93 | 63.44% | 36.56% |
| Japonica Intermediate | 66 | 12.12% | 87.88% |
| Group VI/Aromatic | 0 | 0.00% | 100.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1018926664 | G->A | INTERGENIC | None |