Detailed information of SNP:
|
SNP ID:
sf1018927227(Gbrowse)
Chromosome: chr10 Position: 18927227 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1352 | 98.45% | 1.55% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 431 | 95.36% | 4.64% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 284 | 96.83% | 3.17% |
| Tropical Japonica | 90 | 97.78% | 2.22% |
| Japonica Intermediate | 57 | 84.21% | 15.79% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1018927227 | G->C | INTERGENIC | None |