Detailed information of SNP:
|
SNP ID:
sf1018972732(Gbrowse)
Chromosome: chr10 Position: 18972732 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 59.31% | 40.69% |
| All Indica | 798 | 93.73% | 6.27% |
| All Japonica | 497 | 14.49% | 85.51% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 210 | 86.67% | 13.33% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 60.64% | 39.36% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1018972732 | C->T | INTERGENIC | None |