Detailed information of SNP:
|
SNP ID:
sf1018977169(Gbrowse)
Chromosome: chr10 Position: 18977169 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 51.44% | 48.56% |
| All Indica | 799 | 80.48% | 19.52% |
| All Japonica | 497 | 14.29% | 85.71% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 46.48% | 53.52% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1018977169 | C->T | INTERGENIC | None |