Detailed information of SNP:
|
SNP ID:
sf1019047843(Gbrowse)
Chromosome: chr10 Position: 19047843 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 98.44% | 1.56% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 486 | 95.88% | 4.12% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 327 | 98.17% | 1.83% |
| Tropical Japonica | 92 | 95.65% | 4.35% |
| Japonica Intermediate | 67 | 85.07% | 14.93% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1019047843 | C->T | INTERGENIC | None |