Detailed information of SNP:
|
SNP ID:
sf1019111662(Gbrowse)
Chromosome: chr10 Position: 19111662 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 69.78% | 30.22% |
| All Indica | 799 | 98.87% | 1.13% |
| All Japonica | 492 | 17.89% | 82.11% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 4.78% | 95.22% |
| Tropical Japonica | 90 | 66.67% | 33.33% |
| Japonica Intermediate | 67 | 17.91% | 82.09% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1019111662 | T->C | LOC_Os10g35880(LOC_Os10g35880.1) | Non-Synonymous SNP |