Detailed information of SNP:
SNP ID:
sf1019111662(Gbrowse)
Chromosome: chr10 Position: 19111662 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1413 | 69.78% | 30.22% |
All Indica | 799 | 98.87% | 1.13% |
All Japonica | 492 | 17.89% | 82.11% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 98.13% | 1.87% |
Indica II | 213 | 99.53% | 0.47% |
Indica Intermediate | 211 | 99.53% | 0.47% |
Temperate Japonica | 335 | 4.78% | 95.22% |
Tropical Japonica | 90 | 66.67% | 33.33% |
Japonica Intermediate | 67 | 17.91% | 82.09% |
Group VI/Aromatic | 14 | 85.71% | 14.29% |
Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1019111662 | T->C | LOC_Os10g35880(LOC_Os10g35880.1) | Non-Synonymous SNP |