Detailed information of SNP:
|
SNP ID:
sf1019150220(Gbrowse)
Chromosome: chr10 Position: 19150220 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 88.94% | 11.06% |
| All Indica | 799 | 80.98% | 19.02% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 76.53% | 23.47% |
| Indica II | 213 | 81.69% | 18.31% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1019150220 | G->A | LOC_Os10g35960(LOC_Os10g35960.2) | INTRON |
| sf1019150220 | G->A | LOC_Os10g35960(LOC_Os10g35960.1) | INTRON |