Detailed information of SNP:
|
SNP ID:
sf1019157058(Gbrowse)
Chromosome: chr10 Position: 19157058 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 70.87% | 29.13% |
| All Indica | 796 | 98.99% | 1.01% |
| All Japonica | 493 | 20.89% | 79.11% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 98.39% | 1.61% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 331 | 8.16% | 91.84% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1019157058 | G->T | INTERGENIC | None |