Detailed information of SNP:
|
SNP ID:
sf1019222989(Gbrowse)
Chromosome: chr10 Position: 19222989 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1392 | 96.48% | 3.52% |
| All Indica | 778 | 94.73% | 5.27% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 372 | 95.70% | 4.30% |
| Indica II | 203 | 93.60% | 6.40% |
| Indica Intermediate | 203 | 94.09% | 5.91% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 92.11% | 7.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1019222989 | G->A | INTERGENIC | None |