Detailed information of SNP:
|
SNP ID:
sf1019272485(Gbrowse)
Chromosome: chr10 Position: 19272485 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 87.09% | 12.91% |
| All Indica | 798 | 86.97% | 13.03% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 60.38% | 39.62% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1019272485 | C->T | INTERGENIC | None |