Detailed information of SNP:
SNP ID:
sf1019292478(Gbrowse)
Chromosome: chr10 Position: 19292478 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1419 | 70.05% | 29.95% |
All Indica | 799 | 99.37% | 0.63% |
All Japonica | 497 | 17.10% | 82.90% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 98.93% | 1.07% |
Indica II | 213 | 100.00% | 0.00% |
Indica Intermediate | 211 | 99.53% | 0.47% |
Temperate Japonica | 335 | 2.69% | 97.31% |
Tropical Japonica | 94 | 68.09% | 31.91% |
Japonica Intermediate | 68 | 17.65% | 82.35% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1019292478 | T->C | INTERGENIC | None |