Detailed information of SNP:
SNP ID:
sf1019292830(Gbrowse)
Chromosome: chr10 Position: 19292830 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1419 | 98.73% | 1.27% |
All Indica | 799 | 100.00% | 0.00% |
All Japonica | 497 | 96.38% | 3.62% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 213 | 100.00% | 0.00% |
Indica Intermediate | 211 | 100.00% | 0.00% |
Temperate Japonica | 335 | 98.21% | 1.79% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 82.35% | 17.65% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1019292830 | G->C | LOC_Os10g36229(LOC_Os10g36229.1) | Non-Synonymous SNP |