Detailed information of SNP:
|
SNP ID:
sf1019302546(Gbrowse)
Chromosome: chr10 Position: 19302546 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 62.86% | 37.14% |
| All Indica | 799 | 89.61% | 10.39% |
| All Japonica | 497 | 15.49% | 84.51% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 81.69% | 18.31% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1019302546 | T->C | INTERGENIC | None |