Detailed information of SNP:
|
SNP ID:
sf1019305124(Gbrowse)
Chromosome: chr10 Position: 19305124 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1387 | 97.19% | 2.81% |
| All Indica | 768 | 95.44% | 4.56% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 357 | 98.32% | 1.68% |
| Indica II | 205 | 91.71% | 8.29% |
| Indica Intermediate | 206 | 94.17% | 5.83% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1019305124 | C->T | LOC_Os10g36250(LOC_Os10g36250.1) | INTRON |