Detailed information of SNP:
|
SNP ID:
sf1019320648(Gbrowse)
Chromosome: chr10 Position: 19320648 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 60.06% | 39.94% |
| All Indica | 795 | 89.43% | 10.57% |
| All Japonica | 496 | 14.52% | 85.48% |
| Aus | 66 | 54.55% | 45.45% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 211 | 80.09% | 19.91% |
| Indica Intermediate | 209 | 83.73% | 16.27% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 67 | 11.94% | 88.06% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1019320648 | C->T | LOC_Os10g36270(LOC_Os10g36270.1) | UTR_5_PRIME |