Detailed information of SNP:
|
SNP ID:
sf1019324130(Gbrowse)
Chromosome: chr10 Position: 19324130 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 60.81% | 39.19% |
| All Indica | 797 | 90.21% | 9.79% |
| All Japonica | 497 | 15.09% | 84.91% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 211 | 81.04% | 18.96% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 63.83% | 36.17% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1019324130 | C->T | LOC_Os10g36270(LOC_Os10g36270.1) | Synonymous |