Detailed information of SNP:
|
SNP ID:
sf1019324778(Gbrowse)
Chromosome: chr10 Position: 19324778 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 60.82% | 39.18% |
| All Indica | 793 | 90.54% | 9.46% |
| All Japonica | 496 | 14.52% | 85.48% |
| Aus | 64 | 59.38% | 40.62% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 210 | 81.43% | 18.57% |
| Indica Intermediate | 208 | 87.02% | 12.98% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 93 | 63.44% | 36.56% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1019324778 | A->C | LOC_Os10g36270(LOC_Os10g36270.1) | Synonymous |