Detailed information of SNP:
|
SNP ID:
sf1019325111(Gbrowse)
Chromosome: chr10 Position: 19325111 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1405 | 61.35% | 38.65% |
| All Indica | 791 | 91.15% | 8.85% |
| All Japonica | 497 | 14.89% | 85.11% |
| Aus | 61 | 60.66% | 39.34% |
| Indica I | 374 | 97.86% | 2.14% |
| Indica II | 211 | 81.52% | 18.48% |
| Indica Intermediate | 206 | 88.83% | 11.17% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 64.89% | 35.11% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1019325111 | C->A | LOC_Os10g36270(LOC_Os10g36270.1) | UTR_3_PRIME |