Detailed information of SNP:



SNP ID: sf1019325219(Gbrowse)

Chromosome: chr10

Position: 19325219
Major allele: C

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of A(minor allele)
All1408 61.65% 38.35%
All Indica789 91.63% 8.37%
All Japonica497 14.69% 85.31%
Aus66 63.64% 36.36%
Indica I375 97.87% 2.13%
Indica II208 82.21% 17.79%
Indica Intermediate206 89.81% 10.19%
Temperate Japonica335 1.49% 98.51%
Tropical Japonica94 63.83% 36.17%
Japonica Intermediate68 11.76% 88.24%
Group VI/Aromatic14 42.86% 57.14%
Intermediate42 57.14% 42.86%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1019325219 A->C LOC_Os10g36270(LOC_Os10g36270.1) UTR_3_PRIME