Detailed information of SNP:
|
SNP ID:
sf1019325453(Gbrowse)
Chromosome: chr10 Position: 19325453 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 57.05% | 42.95% |
| All Indica | 793 | 86.51% | 13.49% |
| All Japonica | 497 | 14.49% | 85.51% |
| Aus | 65 | 35.38% | 64.62% |
| Indica I | 374 | 97.33% | 2.67% |
| Indica II | 211 | 72.04% | 27.96% |
| Indica Intermediate | 208 | 81.73% | 18.27% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1019325453 | T->C | INTERGENIC | None |