Detailed information of SNP:
|
SNP ID:
sf1019326524(Gbrowse)
Chromosome: chr10 Position: 19326524 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 61.76% | 38.24% |
| All Indica | 796 | 91.96% | 8.04% |
| All Japonica | 497 | 14.29% | 85.71% |
| Aus | 64 | 64.06% | 35.94% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 211 | 84.83% | 15.17% |
| Indica Intermediate | 210 | 90.48% | 9.52% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1019326524 | A->G | INTERGENIC | None |