Detailed information of SNP:
|
SNP ID:
sf1019326628(Gbrowse)
Chromosome: chr10 Position: 19326628 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 58.72% | 41.28% |
| All Indica | 798 | 88.35% | 11.65% |
| All Japonica | 497 | 14.69% | 85.31% |
| Aus | 66 | 45.45% | 54.55% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 212 | 76.89% | 23.11% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1019326628 | A->C | INTERGENIC | None |