Detailed information of SNP:
|
SNP ID:
sf1019336898(Gbrowse)
Chromosome: chr10 Position: 19336898 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 71.23% | 28.77% |
| All Indica | 798 | 51.25% | 48.75% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 42.13% | 57.87% |
| Indica II | 213 | 70.89% | 29.11% |
| Indica Intermediate | 210 | 47.62% | 52.38% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1019336898 | T->G | LOC_Os10g36310(LOC_Os10g36310.1) | Synonymous |