Detailed information of SNP:
|
SNP ID:
sf1019340559(Gbrowse)
Chromosome: chr10 Position: 19340559 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 81.46% | 18.54% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 486 | 47.94% | 52.06% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 330 | 29.39% | 70.61% |
| Tropical Japonica | 92 | 92.39% | 7.61% |
| Japonica Intermediate | 64 | 79.69% | 20.31% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1019340559 | G->A | INTERGENIC | None |