Detailed information of SNP:
|
SNP ID:
sf1019467749(Gbrowse)
Chromosome: chr10 Position: 19467749 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 88.92% | 11.08% |
| All Indica | 799 | 89.61% | 10.39% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 65 | 23.08% | 76.92% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 73.71% | 26.29% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1019467749 | T->G | INTERGENIC | None |