Detailed information of SNP:
|
SNP ID:
sf1019580933(Gbrowse)
Chromosome: chr10 Position: 19580933 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 69.58% | 30.42% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 497 | 17.30% | 82.70% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1019580933 | T->A | INTERGENIC | None |