Detailed information of SNP:
|
SNP ID:
sf1019598278(Gbrowse)
Chromosome: chr10 Position: 19598278 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1406 | 81.44% | 18.56% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 484 | 47.93% | 52.07% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 329 | 30.09% | 69.91% |
| Tropical Japonica | 90 | 94.44% | 5.56% |
| Japonica Intermediate | 65 | 73.85% | 26.15% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1019598278 | G->A | INTERGENIC | None |