Detailed information of SNP:
|
SNP ID:
sf1019615237(Gbrowse)
Chromosome: chr10 Position: 19615237 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 67.96% | 32.04% |
| All Indica | 799 | 97.00% | 3.00% |
| All Japonica | 497 | 16.90% | 83.10% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 69.15% | 30.85% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 37 | 64.86% | 35.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1019615237 | G->A | INTERGENIC | None |